Plastome analysis unveils Inverted Repeat (IR) expansion and positive selection in Sea Lavenders (<i>Limonium</i>, Plumbaginaceae, Limonioideae, Limonieae)
  • Darshetkar, Ashwini M.
  • Maurya, Satish
  • Lee, Changyoung
  • Bazarragchaa, Badamtsetseg
  • Batdelger, Gantuya
  • ... Jeong, Eun Ju
  • 외 4명
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초록

The genus Limonium, commonly known as Sea Lavenders, is one of the most species-rich genera of the family Plumbaginaceae. In this study, two new plastomes for the genus Limonium, viz. L. tetragonum and L. bicolor, were sequenced and compared to available Limonium plastomes, viz. L. aureum and L. tenellum, to understand the gene content and structural variations within the family. The loss of the rpl16 intron and pseudogenisation of rpl23 was observed. This study reports, for the first time, expansion of the IRs to include the ycf1 gene in Limonium plastomes, incongruent with previous studies. Two positively selected genes, viz. ndhF and ycf2, were identified. Furthermore, putative barcodes are proposed for the genus, based on the nucleotide diversity of four Limonium plastomes.

키워드

Intron lossIR expansionpositive selectionpseudogenisationycf1INDEPENDENT TRANSFERSSEQUENCESDIVERSITYEVOLUTIONPROVIDEDNA
제목
Plastome analysis unveils Inverted Repeat (IR) expansion and positive selection in Sea Lavenders (<i>Limonium</i>, Plumbaginaceae, Limonioideae, Limonieae)
저자
Darshetkar, Ashwini M.Maurya, SatishLee, ChangyoungBazarragchaa, BadamtsetsegBatdelger, GantuyaJanchiv, AgiimaaJeong, Eun JuChoi, SanghoChoudhary, Ritesh KumarKim, Soo-Yong
DOI
10.3897/phytokeys.175.61054
발행일
2021-04
유형
Article
저널명
PhytoKeys
175
페이지
89 ~ 107