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Draft genome of semisulcospira libertina, a species of freshwater snailopen access

Authors
Gim, J.-A.Baek, K.-W.Hah, Y.-S.Choo, H.J.Kim, J.-S.Yoo, J.-I.
Issue Date
Sep-2021
Publisher
Korea Genome Organization
Keywords
De novo assembly; Draft genome; Semisulcospisa libertina
Citation
Genomics and Informatics, v.19, no.3
Indexed
SCOPUS
Journal Title
Genomics and Informatics
Volume
19
Number
3
URI
https://scholarworks.gnu.ac.kr/handle/sw.gnu/5649
DOI
10.5808/gi.21039
ISSN
1598-866X
2234-0742
Abstract
Semisulcospira libertina, a species of freshwater snail, is widespread in East Asia. It is im-portant as a food source. Additionally, it is a vector of clonorchiasis, paragonimiasis, metagonimiasis, and other parasites. Although S. libertina has ecological, commercial, and clinical importance, its whole-genome has not been reported yet. Here, we revealed the genome of S. libertina through de novo assembly. We assembled the whole-genome of S. libertina and determined its transcriptome for the first time using Illumina NovaSeq 6000 platform. According to the k-mer analysis, the genome size of S. libertina was estimated to be 3.04 Gb. Using RepeatMasker, a total of 53.68% of repeats were identified in the genome assembly. Genome data of S. libertina reported in this study will be useful for identification and conservation of S. libertina in East Asia. ? 2021 Korea Genome Organization.
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