Comprehensive Method for Soybean Cultivar Identification Using MGIseq, VCF2GENOME, and REST API
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초록

This protocol provides a comprehensiveREST APIMGIseqCultivar identificationSoybean method for identifying soybeanSoybeans (Glycine max) cultivars using a combination of advanced genomic and bioinformatic techniques. The process begins with DNA extractionDNA extraction from soybeanSoybeans leaf tissue, followed by MGIseqMGIseq library construction and high-throughput sequencing. The resulting data undergoes rigorous quality control and preprocessing before being mapped to the soybeanSoybeans reference genome. Variant callingVariant calling is then performed to generate a Variant Call Format (VCF) file, which is subsequently analyzed using the web application, VCF2GENOME and the REST APIREST API. The API facilitates the comparison of the sample’s genetic profile with a curated database of known soybeanSoybeans cultivars, enabling accurate identification. This method is designed for researchers, breeders, and seed companies who require high-throughput, high-accuracy cultivar identificationCultivar identification for various applications in soybeanSoybeans genetics, breeding, and seed quality control.

키워드

BioinformaticsCultivar identificationGenomicsGlycine maxMGIseqREST APISoybean
제목
Comprehensive Method for Soybean Cultivar Identification Using MGIseq, VCF2GENOME, and REST API
저자
Park, Joo-SeokKang, Yang Jae
DOI
10.1007/978-1-0716-4820-9_3
발행일
2026-10
유형
Book Chapter
저널명
Methods in molecular biology (Clifton, N.J.)
2977
페이지
29 ~ 47