Polyphasic and comparative genomic characterization of a novel Mariniflexile species in the rhizosphere microbiome of tomato resistant to bacterial wilt
  • Kwak, Min-Jung
  • Park, Jaehyo
  • Park, Hyein
  • Yoon, Jaekyung
  • Lee, Jidam
  • ... Kwon, Soon-Kyeong
  • 외 4명
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초록

A plethora of microbes resides in the plant rhizosphere, and some play roles in host health and disease. We previously isolated a Gram-negative, aerobic, rod-shaped rhizobacterium, TRM1-10, that contributes to bacterial wilt resistance of tomato caused by Ralstonia solanacearum. In this study, we characterized TRM1-10 through physiological and biochemical analyses, complemented by whole genome sequencing and comparative genomic analyses. Phylogenetic analysis using the 16S rRNA gene and genome sequences revealed that TRM1-10 belongs to the genus Mariniflexile and represents a new lineage. TRM1-10 also exhibits noticeable differences in physiological and biochemical characteristics compared to other Mariniflexile species. Thus, based on phylogenetic affiliation and chemotaxonomic characteristics, we propose this bacterium as a novel species in the genus, Mariniflexile rhizosphaerae sp. nov. (type strain TRM1-10T = KCTC 18646PT = DSM 33122T). Comparative genome analyses revealed that TRM1-10 harbors more genes linked to soil adaptation compared to other phylogenetically related Mariniflexile species, most of which are associated with marine habitats. The genomic features of TRM1-10 and other strains in the species may allow the taxon to adapt to the soil and rhizosphere, compete effectively with the resident soil microbiota, and contribute to plant health.

키워드

<italic>Flavobacteriia</italic><italic>Solanaceae</italic>Disease resistanceMetagenomeComparative genomicsSP-NOV.FAMILY FLAVOBACTERIACEAEMARINE BACTERIUMEMENDED DESCRIPTIONGEN. NOV.RALSTONIA-SOLANACEARUMMAXIMUM-LIKELIHOODSULFATED FUCANSBINDING LECTINSP. NOV.
제목
Polyphasic and comparative genomic characterization of a novel Mariniflexile species in the rhizosphere microbiome of tomato resistant to bacterial wilt
저자
Kwak, Min-JungPark, JaehyoPark, HyeinYoon, JaekyungLee, JidamHahnke, Richard L.Lee, Seon-WooKwon, Soon-KyeongSong, Ju YeonKim, Jihyun F.
DOI
10.1038/s41598-025-18301-6
발행일
2025-10
유형
Article
저널명
Scientific Reports
15
1