상세 보기
- Jang, Jiyi;
- Abbas, Ather;
- Kim, Hyein;
- Rhee, Chaeyoung;
- Shin, Seung Gu;
- 외 3명
WEB OF SCIENCE
8SCOPUS
8초록
Recreational beaches face a threat from pathogenic bacteria that harbor antibiotic resistance genes (ARGs). To predict bacterial occurrence and comprehend their non-linear relationship with hydrometeorological features, advanced machine- and deep-learning algorithms were employed. These algorithms include regression trees (RT), as well as interpretable deep-learning algorithms such as the ‘Input Attention-Long Short-Term Memory (IA-LSTM)’ and ‘Temporal Fusion Transformer (TFT)’. Our focus was on predicting the occurrence of Prevotella, a prevalent pathogenic bacterium found at the beaches. Utilizing model-dependent and model-agnostic interpretation methods, which encompass sensitivity analysis, permutation, and the SHapley Additive exPlanations (SHAP) importance, we evaluated model behavior. RT-based algorithms exhibited predictive capabilities comparable to those of IA-LSTM and TFT, achieving validation Nash–Sutcliffe efficiencies of 0.93, 0.94, and 0.96, respectively. However, the deep-learning algorithms (IA-LSTM and TFT) are surpassed in terms of interpretability. The model-dependent interpretation method identified heavy precipitation as a pivotal hydrometeorological feature linked to increased Prevotella occurrence. Notably, the IA-LSTM identified Prevotella as a potential host for the sulfonamide resistance gene (sul1), suggesting the potential of Prevotella as an indicator for sul1. This research, leveraging interpretable data-driven models, advances our understanding of the hydrometeorological features influencing the occurrence of pathogenic bacteria and the prevalence of ARGs at the beach, and enhances predictive capabilities for bacterial occurrence. © 2023
키워드
- 제목
- Prediction and interpretation of pathogenic bacteria occurrence at a recreational beach using data-driven algorithms
- 저자
- Jang, Jiyi; Abbas, Ather; Kim, Hyein; Rhee, Chaeyoung; Shin, Seung Gu; Chun, Jong Ahn; Baek, Sangsoo; Cho, Kyung Hwa
- 발행일
- 2023-12
- 유형
- Article
- 권
- 78