Whole genome de novo sequencing and genome annotation of the world popular cultivated edible mushroom, Lentinula edodes

Shim, Donghwan; Park, Sin-Gi; Kim, Kangmin; Bae, Wonsil; Lee, Gir Won; Ha, Byeong-Suk; Ro, Hyeon-Su; Kim, Myungkil; Ryoo, Rhim; Rhee, Sung-Keun; Nou, Ill-Sup; Koo, Chang-Duck; Hong, Chang Pyo; Ryu, Hojin

doi:10.1016/j.jbiotec.2016.02.032

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Whole genome de novo sequencing and genome annotation of the world popular cultivated edible mushroom, Lentinula edodes

Shim, Donghwan;
Park, Sin-Gi;
Kim, Kangmin;
Bae, Wonsil;
Lee, Gir Won;
... Ro, Hyeon-Su;
외 8명

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초록

Lentinula edodes, the popular shiitake mushroom, is one of the most important cultivated edible mushrooms. It is used as a food and for medicinal purposes. Here, we present the 46.1 Mb draft genome of L. edodes, comprising 13,028 predicted gene models. The genome assembly consists of 31 scaffolds. Gene annotation provides key information about various signaling pathways and secondary metabolites. This genomic information should help establish the molecular genetic markers for MAS/MAB and increase our understanding of the genome structure and function. (C) 2016 Elsevier B.V. All rights reserved.

키워드

Lentinula edodes B17; Shiitake mushroom; Genome sequence; Lentinan; Lignocellulolytic enzymes

제목: Whole genome de novo sequencing and genome annotation of the world popular cultivated edible mushroom, Lentinula edodes

저자: Shim, Donghwan; Park, Sin-Gi; Kim, Kangmin; Bae, Wonsil; Lee, Gir Won; Ha, Byeong-Suk; Ro, Hyeon-Su; Kim, Myungkil; Ryoo, Rhim; Rhee, Sung-Keun; Nou, Ill-Sup; Koo, Chang-Duck; Hong, Chang Pyo; Ryu, Hojin

DOI: 10.1016/j.jbiotec.2016.02.032

발행일: 2016-04-10

유형: Article

저널명: Journal of Biotechnology

권: 223

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