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SCIESCOPUS
A Functional Network Model of the Metastasis Suppressor PEBP1/RKIP and Its Regulators in Breast Cancer Cellsopen access

Ahmed, Mahmoud; Lai, Trang Huyen; Kim, Wanil; Kim, Deok Ryong

ArticleIssue Date2021CitationCANCERS, v.13, no.23PublisherMDPI
SCIESCOPUS
A Small Fraction of Progenitors Differentiate Into Mature Adipocytes by Escaping the Constraints on the Cell Structureopen access

Ahmed, Mahmoud; Lai, Trang Huyen; Kim, Deok Ryong

ArticleIssue Date2021CitationFRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, v.9PublisherFRONTIERS MEDIA SA
SCIESCOPUS
Autophagy-mediated degradation of NOTCH1 intracellular domain controls the epithelial to mesenchymal transition and cancer metastasisopen access

Zada, Sahib; Hwang, Jin Seok; Lai, Trang Huyen; Pham, Trang Minh; Ahmed, Mahmoud; Elashkar, Omar; Kim, Wanil; Kim, Deok Ryong

ArticleIssue Date2022CitationCELL AND BIOSCIENCE, v.12, no.1PublisherBMC
SCISCIESCOPUS
Calpain-dependent Beclin1 cleavage stimulates senescence-associated cell death in HT22 hippocampal cells under the oxidative stress conditions

Huynh Quoc Nguyen; Zada, Sahib; Trang Huyen Lai; Trang Minh Pham; Hwang, Jin Seok; Ahmed, Mahmoud; Kim, Deok Ryong

ArticleIssue Date2019CitationNeuroscience Letters, v.701, pp 106 - 111PublisherElsevier BV
SCIESCOPUS
Cancer cells forgo translating mRNA transcribed from genes of nonspecialized tasksopen access

Ahmed, Mahmoud; Pham, Trang Minh; Kim, Hyun Joon; Kim, Deok Ryong

ArticleIssue Date2024CitationFEBS Open Bio, v.14, no.5, pp 793 - 802PublisherElsevier BV
SCIESCOPUS
Chlorogenic acid protects human chondrocyte C28/I2 cells from oxidative stress-induced cell death through activation of autophagyopen access

Zada, Sahib; Pham, Trang Minh; Hwang, Jin Seok; Ahmed, Mahmoud; Lai, Trang Huyen; Elashkar, Omar; Kim, Jung-Hwan; Kim, Dong Hee; Kim, Deok Ryong

ArticleIssue Date2021CitationLife Sciences, v.285PublisherElsevier BV
SCIESCOPUS
Co-Expression Network Analysis of AMPK and Autophagy Gene Products during Adipocyte Differentiationopen access

Ahmed, Mahmoud; Hwang, Jin Seok; Trang Huyen Lai; Zada, Sahib; Huynh Quoc Nguyen; Trang Min Pham; Yun, Miyong; Kim, Deok Ryong

ArticleIssue Date2018CitationINTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v.19, no.6PublisherMDPI
SCIESCOPUS
colocr: an R package for conducting co-localization analysis on fluorescence microscopy imagesopen access

Ahmed, Mahmoud; Trang Huyen Lai; Kim, Deok Ryong

ArticleIssue Date2019CitationPEERJ, v.7, no.7PublisherPEERJ INC
SCIESCOPUS
Control of the Epithelial-to-Mesenchymal Transition and Cancer Metastasis by Autophagy-Dependent SNAI1 Degradationopen access

Zada, Sahib; Hwang, Jin Seok; Ahmed, Mahmoud; Trang Huyen Lai; Trang Minh Pham; Kim, Deok Ryong

ArticleIssue Date2019CitationCELLS, v.8, no.2PublisherMDPI
SCIESCOPUS
cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in canceropen access

Ahmed, Mahmoud; Kim, Deok Ryong

ArticleIssue Date2019CitationPEERJ, v.7, no.3PublisherPEERJ INC
SCIESCOPUS
Cross talk between autophagy and oncogenic signaling pathways and implications for cancer therapyopen access

Zada, Sahib; Hwang, Jin Seok; Ahmed, Mahmoud; Lai, Trang Huyen; Pham, Trang Minh; Elashkar, Omar; Kim, Deok Ryong

ArticleIssue Date2021CitationBiochimica et Biophysica Acta - Reviews on Cancer, v.1876, no.1PublisherElsevier BV
SCIESCOPUS
Curated gene expression dataset of differentiating 3T3-L1 adipocytes under pharmacological and genetic perturbationsopen access

Ahmed, Mahmoud; Min, Do Sik; Kim, Deok Ryong

ArticleIssue Date2020CitationADIPOCYTE, v.9, no.1, pp 600 - 608PublisherTAYLOR & FRANCIS INC
SCIESCOPUS
Disruption of cancer cell functions by task-specific drug perturbationsopen access

Ahmed, Mahmoud; Kim, Deok Ryong

ArticleIssue Date2022CitationFRONTIERS IN PHARMACOLOGY, v.13PublisherFRONTIERS MEDIA SA
SCIESCOPUS
Functional Linkage of RKIP to the Epithelial to Mesenchymal Transition and Autophagy during the Development of Prostate Canceropen access

Ahmed, Mahmoud; Trang Huyen Lai; Zada, Sahib; Hwang, Jin Seok; Trang Minh Pham; Yun, Miyong; Kim, Deok Ryong

ArticleIssue Date2018CitationCANCERS, v.10, no.8PublisherMDPI
SCIESCOPUS
Hierarchical regulation of autophagy during adipocyte differentiationopen access

Ahmed, Mahmoud; Trang Huyen Lai; Trang Minh Pham; Zada, Sahib; Elashkar, Omar; Hwang, Jin Seok; Kim, Deok Ryong

ArticleIssue Date2022CitationPLOS ONE, v.17, no.1PublisherPUBLIC LIBRARY SCIENCE
SCIESCOPUS
Integrating binding and expression data to predict transcription factors combined functionopen access

Ahmed, Mahmoud; Min, Do Sik; Kim, Deok Ryong

ArticleIssue Date2020CitationBMC GENOMICS, v.21, no.1PublisherBMC
SCIESCOPUS
Life history dynamics of evolving tumors: insights into task specialization, trade-offs, and tumor heterogeneityopen access

Ahmed, Mahmoud; Kim, Deok Ryong

ArticleIssue Date2024CitationCancer Cell International, v.24, no.1PublisherBioMed Central
SCIESCOPUS
LINPS: a database for cancer-cell-specific perturbations of biological networksopen access

Ahmed, Mahmoud; Kim, Deok Ryong

ArticleIssue Date2021CitationDATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, v.2021PublisherOXFORD UNIV PRESS
SCIESCOPUS
Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytesopen access

Ahmed, Mahmoud; Kim, Deok Ryong

ArticleIssue Date2019CitationADIPOCYTE, v.8, no.1, pp 401 - 411PublisherTAYLOR & FRANCIS INC
SCIESCOPUS
pcr: an R package for quality assessment, analysis and testing of qPCR dataopen access

Ahmed, Mahmoud; Kim, Deok Ryong

ArticleIssue Date2018CitationPEERJ, v.6PublisherPEERJ INC
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